2LS : DNA/RNA

  1. GENE2LS : TITLE 

  2. BLAST

  3. COMPARATIVE SEQUENCE

  4. COMPUTATIONAL

  5. DNA

  6. GENE ALIGNMENT

  7. MICROARRAY

  8. MRNA

  9. PROTEIN

  10. QUANTITATIVE TRAIT

  11. RIBOSOMAL

  12. RNA

  13. RRNA

  14. SEQUENCE

  15. TRNA

    
*BLAST*@2ls dna/rna

  1. BLAST Search 

  2. BLAST2: Sequence Similarity Search Served by GenomeNet

  3. Bork Group's BLAST2 Search Service at EMBL

  4. ExPASy Interface to the EMBnet-CH BLAST Network Service

  5. High Throughput BLAST Based on Web Services

  6. Interactive Blast Query

  7. Saturated BLAST 

  8. The BLAST guide's glossary

  9. VecScreen - BLAST-based detection of vector contamination

  10. WU-BLAST Archives

  11. WWW BLAST at NCBI

  12. WebACT:blast comparison

  13. mpiBLAST: Open Source Parallel BLAST






    
*COMPARATIVE SEQUENCE*@2ls  dna/rna

  14. A Tool for Comparative Promoter Sequence Analysis

  15. FamilyJewels: Comparative sequence analysis for genomic data.

  16. GeneAnnot Home Page:gene sequence comparison

  17. PolyPhred:fluorescent sequence comparison






    
*COMPUTATIONAL*@2ls dna/rna

  18. Bioinformatics and Computational Biology Software

  19. Gene Quantification

  20. Homepage for Anton Enright:computational genome analysis

  21. Markov Chain Monte Carlo Sequence Alignment Utility

  22. PEDANT front page:computational sequence analysis sw

  23. Publicly Available Software - Coordinated Lab for Computational Genomics 






    
*DNA*@2ls dna/rna

  24. AFFYR package: an R open and documented package to use oligonucleotide

  25. AMOD:assisted morpholino design

  26. Activity Links:DNA

  27. Biozon :dna protein and paths

  28. CORG CNB Annotation:multispecies dna comparison and annotation

  29. Cister:cis-element cluster ,dna

  30. Codon Optimizer

  31. Codon Usage Database

  32. Cytokine Family cDNA Database (dbCFC)

  33. DNA Methylation Database

  34. DNA Mining Informatics Software

  35. DNA-Chip Analyzer (dChip):gene analysis sw

  36. DNASIS software:protein analysis

  37. DNAtools

  38. Dna Data Bank of Japan

  39. Dot Plot:rna-dna comparison

  40. ENCyclopedia Of DNA Elements (ENCODE)

  41. Euler: dNA fragment assembly software

  42. Exploring DNA

  43. GPCRDB home page:g protein coupled receptors

  44. Gain and Loss Analysis of DNA

  45. HapBlock - The dynamic programming algorithms for Haplotype Block Partitioning and Tag SNPs selection by Haplotype Data and Genotype Data 

  46. IDT SciTools Gateway:gene

  47. Japanese SNP Database :single nucleotide

  48. Mitomap:poymorphisms of human dna

  49. NAR Database Issue:nucleic acid research

  50. NDB Biomolecular Resource:nuclear acid db

  51. NEBcutter V2.0:dna enzyme

  52. NUCLEIC ACID DATABASE

  53. NWFSC Molecular Biology Protocols:dna

  54. Non-canonical Base Pair Database

  55. NucleaRDB:dna

  56. Oligonucleotide Properties Calculator

  57. PINdb - Database of Nuclear Protein Complexes

  58. Pattern Search and Discovery:dna

  59. RNA and DNA Folding - Applications - Center for Bioinformatics - Rensselaer Polytechnic Institute

  60. Restriction Enzyme Site Mapper version 3 

  61. S/MART DB - The S/MAR transaction Database:dna, chromatin

  62. STRBase:short tandem repeat dna

  63. Savannah: Project Info - DNArchitect

  64. Software for Statistical Folding and Rational Design of Nucleic Acids

  65. The Aptamer Database :dna

  66. WatCut: Digest your DNA online, and create new restriction sites with silent mutations

  67. Web SIDD Home Page:stress induced dna destabilization

  68. WelcomeUTR:db

  69. YMF 3.0 - Software for Finding DNA Motifs

  70. dbSNP: A Database of Single Nucleotide Polymorphisms

  71. nnpredict input form

  72. pDRAW32 - freeware DNA cloning, analysis and visualisation software

  73. probeBase:rna,dna






    
*GENE ALIGNMENT*@2ls dna/rna

  74. COMBAT - Combined DNA/protein alignment

  75. Cross Species Aligner

  76. DIALIGN, a novel alignment algorithm:pairwise, multiple, sw

  77. ESPript :sequence alignment

  78. GFF2APLOT MAIN PAGE: Pair-wise Alignments in PostScript.

  79. MAVID:multiple alignment server

  80. STRAP:  refinement of huge multiple alignments 

  81. Visualization tools for bacterial genome alignments






    
*MICROARRAY*@2ls dna/rna

  82. BRB ArrayTools:micro

  83. BioArray - a tool to analyze macroarray images

  84. BioArray Software Environment

  85. Dapple: Image Analysis Software for DNA Microarrays

  86. ExpressYourself: microarray data processing platform

  87. Home of VARAN:variability across microarray experiments

  88. MADTools:for dna microarray

  89. MatArray toolbox:microarray

  90. MicroArray Explorer

  91. Microarray Image Analysis Software

  92. Oliz: selecting 50mer oligonucleotides for microarrays

  93. Stanford Microarray Database






    
*MRNA*@2ls  dna/rna

  94. HUMAN AU:mrna

  95. MGAlign - a tool for aligning mRNA Sequences to Genomic Sequences

  96. Plant miRNA Target Finder

  97. Spidey -- mRNA to genomic alignment:sw

  98. SplicePredictor Online:plant pre mrna

  99. The tmRNA Website

  100. comRNA:secondary structure

  101. promec index:mrna ecoli






    
*PROTEIN*@2ls dna/rna

  102. PROTEIN : TITLE






    
*QUANTITATIVE TRAIT*@2ls dna/rna

  103. QTDT Home Page:quantitative and discrete (genetic) traits

  104. QTL Cartographer :genetic quantitative traits (sw)

  105. QTL Express: mapping quantitative trait loci






    
*RIBOSOMAL*@2ls dna/rna

  106. Database Of Ribosomal Crosslinks

  107. IRES Database:internal ribosome entry sites

  108. Ribosomal Database Project II 

  109. The European ribosomal RNA database

  110. Welcome to the 5S ribosomal RNA home page.:search






    
*RNA*@2ls dna/rna

  111. ALIDOT:sw detecting conserved rna structure

  112. ARB::rna sequence sw

  113. ASRP:aradopsis thaliana small rna project

  114. Circles: Automated RNA analysis:sw

  115. ESSA RNA SOFTWARE HOME PAGE

  116. Eukaryotic Promoter Database:of rna

  117. GMAP:mrna sequence alignment sw

  118. GeneSeqer Online:pre-mrna

  119. Homepage of PseudoBase:rna

  120. Information about SELEX_DB:rna

  121. MicroRNA db

  122. MitoDat - Mendelian Inheritance and the Mitochondrion

  123. Non-coding RNA Data Bank

  124. Pfold server:rna

  125. PseudoViewer2:rna

  126. Pseudobase: Information on RNA pseudoknots

  127. RNA folding form

  128. RNA stuff @ tbi.univie.ac.at

  129. RNABase: The RNA Structure Database

  130. RNAdb:mammalian noncoding rna

  131. RNAfold

  132. RNAsoft 

  133. Rfam Home Page   

  134. Ribosomal Internal Spacer Sequence Collection

  135. SRPDB :signal recognition particle database, rna

  136. Subviral RNA Database

  137. The RNA modification DataBase, University of Utah

  138. The miRNA Registry   

  139. Transterm - Database of transcript-related information:rna

  140. UMASS Amherst Yeast snoRNA Database

  141. snoRNA Database Homepage

  142. snoRNA Database

  143. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box RNAs

  144. tmRDB 






    
*RRNA*@2ls  dna/rna

  145. 5S rRNA data bank browser

  146. Fox Lab | Prokaryotic 16S rRNA Signature Database

  147. MIGAL: a tool for rna secondary structure comparison






    
*SEQUENCE*@2ls dna/rna

  148. All-IN-ONE SEQ-ANALYZER

  149. Ann-spec 1.0 server:promoter sequence locator

  150. BLAT Search :sequence search in the genome

  151. BioEdit Sequence Alignment Editor for Windows 95/98/NT

  152. CDSParser 1.0:coding sequence parser

  153. CPHmodels - Homology modelling :search

  154. Comet:dna sequence

  155. DNA-CGR:sw for dna rna sequences

  156. Delila Programs:deoxy.. library language:sw

  157. EBI Reverse Translator:gene

  158. ELM- Functional Sites in Proteins:eukaryote linear motif

  159. EMBOSS-Install.html:sequence

  160. ESTate - EST analysis tools etc 

  161. Elementary Sequence Analysis, Brian Golding

  162. Ensembl Trace Server:dna sequence

  163. Entrez Home 

  164. FUGUE: sequence-structure homology recognition and alignment engine

  165. GP:manipulate dna/rna, protein sequences 

  166. GPCR Subfamily Classifier:sequence

  167. GenePalette: Software for analysis of sequence features in genomic DNA

  168. Genstyle:dna sequence

  169. Greedy mixture learning for multiple motif discovery in biological sequences

  170. Groupe d'Étude et de contrôle des Variétés et des Semences:gene

  171. HYPHY Package Page   :maximum likely analysis of genetic sequence

  172. Hypertext DNA Sequence Display and Restriction Analysis:search

  173. Large Dot Plots:of dna sequences

  174. MICAS - Microsatellites Portal,prokaryotic

  175. MaskerAid:aid to repeatmasker sw

  176. Molecular Probe Data Base:gene

  177. MuGeN:gene analysis

  178. Nucleic Acid Sequence Massager

  179. Nucleic Acid and Protein Sequence Analysis software

  180. Oligo Calculator:oligonucleotide sequence

  181. OmniGene:sequence visualization

  182. Palindrome Checking Utility:for dna sequence

  183. Prediction of Regulatory cis-acting elements

  184. Primer3 Software Distribution:sequence

  185. PySAT: Python Sequence Analysis Tools

  186. REPFIND:exact repeats in nucleotide sequences

  187. SAMBA:Systolic Accelerator for Molecular Biological Applications(sequences)

  188. SRSWWW at EMBL-EBI, Hinxton, Cambridge, UK :sequence retrieval system (of 80 + dbs)

  189. SeqPup Document:biosequence editor

  190. SeqVISTA:nucleotide in protein sequences

  191. Sequence Alerting System:dna

  192. Sequence Analysis for Mac OS X

  193. Sequential Oligogenic Linkage Analysis Routines:genetic

  194. Simple Sequence Repeats Extraction Utility

  195. Staden Package Home Page:dna sequence

  196. The AAT Server:gene analysis and annotation tool

  197. The ASTRAL Compendium forSequence and Structure Analysis

  198. The Sequence Manipulation Suite:sw

  199. Transcriptional Element Search Engine

  200. Verbumculus Sequence Analyzer

  201. WEB-THERMODYN: sequence analysis software for profiling DNA helical stability

  202. WEIGHBOR Weighted Neighbor Joining:dna

  203. Welcome to CBS:center for biological sequence analysis dk

  204. mreps homepage:tandem repeats

  205. pDRAW32 - freeware DNA cloning, sequence analysis and plasmid/DNA plotting software 

  206. seq-mode for gnu emacs






    
*TRNA*@2ls  dna/rna

  207. AARS: Aminoacyl-tRNA Synthetase Data Bank

  208. Compilation of tRNA sequences and sequences of tRNA genes

  209. Genomic tRNA Database: Home:analysis of complete genomes

  210. PLMItRNA
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