2LS : DNA/RNA

  1. GENE2LS : TITLE 

  2. BLAST

  3. COMPARATIVE SEQUENCE

  4. COMPUTATIONAL

  5. DNA

  6. GENE ALIGNMENT

  7. MICROARRAY

  8. MRNA

  9. PROTEIN

  10. QUANTITATIVE TRAIT

  11. RIBOSOMAL

  12. RNA

  13. SEQUENCE

  14. TRNA

    


    
*BLAST*@2ls dna/rna

  1. BLAST Search 

  2. BLAST2: Sequence Similarity Search Served by GenomeNet

  3. Bork Group's BLAST2 Search Service at EMBL

  4. ExPASy Interface to the EMBnet-CH BLAST Network Service

  5. Interactive Blast Query

  6. Saturated BLAST 

  7. The BLAST guide's glossary

  8. VecScreen - BLAST-based detection of vector contamination

  9. WU-BLAST Archives

  10. WWW BLAST at NCBI

  11. WebACT:blast comparison

  12. mpiBLAST: Open Source Parallel BLAST






    
*COMPARATIVE SEQUENCE*@2ls  dna/rna

  13. A Tool for Comparative Promoter Sequence Analysis

  14. FamilyJewels: Comparative sequence analysis for genomic data.

  15. GeneAnnot Home Page:gene sequence comparison

  16. PolyPhred:fluorescent sequence comparison






    
*COMPUTATIONAL*@2ls dna/rna

  17. Bioinformatics and Computational Biology Software

  18. Gene Quantification

  19. Homepage for Anton Enright:computational genome analysis

  20. Markov Chain Monte Carlo Sequence Alignment Utility

  21. PEDANT front page:computational sequence analysis sw

  22. Publicly Available Software - Coordinated Lab for Computational Genomics 






    
*DNA*@2ls dna/rna

  23. 3DNA Home Page (Nucleic Acid Structures; Lu & Olson):sw

  24. AFFYR package: an R open and documented package to use oligonucleotide

  25. Activity Links:DNA

  26. Biozon :dna protein and paths

  27. CORG CNB Annotation:multispecies dna comparison and annotation

  28. Cister:cis-element cluster ,dna

  29. Codon Usage Database

  30. Cytokine Family cDNA Database (dbCFC)

  31. DNA Data Bank of Japan

  32. DNA Methylation Database

  33. DNA Mining Informatics Software

  34. DNA-Chip Analyzer (dChip):gene analysis sw

  35. DNAtools

  36. Dna Data Bank of Japan

  37. Dot Plot:rna-dna comparison

  38. ENCyclopedia Of DNA Elements (ENCODE)

  39. Euler: dNA fragment assembly software

  40. GPCRDB home page:g protein coupled receptors

  41. Gain and Loss Analysis of DNA

  42. HapBlock - The dynamic programming algorithms for Haplotype Block Partitioning and Tag SNPs selection by Haplotype Data and Genotype Data 

  43. IDT Scitools:nucleic acid research

  44. Japanese SNP Database :single nucleotide

  45. Mitomap:poymorphisms of human dna

  46. NAR Database Issue:nucleic acid research

  47. NDB Biomolecular Resource:nuclear acid db

  48. NEBcutter V2.0:dna enzyme

  49. NUCLEIC ACID DATABASE

  50. NWFSC Molecular Biology Protocols:dna

  51. Oligonucleotide Properties Calculator

  52. PINdb - Database of Nuclear Protein Complexes

  53. Pattern Search and Discovery:dna

  54. RNA and DNA Folding - Applications - Center for Bioinformatics - Rensselaer Polytechnic Institute

  55. Restriction Enzyme Site Mapper version 3 

  56. S/MART DB - The S/MAR transaction Database:dna, chromatin

  57. STRBase:short tandem repeat dna

  58. Savannah: Project Info - DNArchitect

  59. Software for Statistical Folding and Rational Design of Nucleic Acids

  60. The Aptamer Database :dna

  61. WatCut: Digest your DNA online, and create new restriction sites with silent mutations

  62. Web SIDD Home Page:stress induced dna destabilization

  63. YMF 3.0 - Software for Finding DNA Motifs

  64. dbSNP: A Database of Single Nucleotide Polymorphisms

  65. probeBase:rna,dna






    
*GENE ALIGNMENT*@2ls dna/rna

  66. COMBAT - Combined DNA/protein alignment

  67. Cross Species Aligner

  68. ESPript :sequence alignment

  69. GFF2APLOT MAIN PAGE: Pair-wise Alignments in PostScript.

  70. MAGNOLIA :multiple alignment

  71. STRAP:  refinement of huge multiple alignments 

  72. Visualization tools for bacterial genome alignments






    
*MICROARRAY*@2ls dna/rna

  73. BRB ArrayTools:micro

  74. BioArray - a tool to analyze macroarray images

  75. BioArray Software Environment

  76. Dapple: Image Analysis Software for DNA Microarrays

  77. ExpressYourself: microarray data processing platform

  78. MADTools:for dna microarray

  79. MatArray toolbox:microarray

  80. MicroArray Explorer

  81. Stanford Microarray Database






    
*MRNA*@2ls  dna/rna

  82. HUMAN AU:mrna

  83. Plant miRNA Target Finder

  84. Spidey -- mRNA to genomic alignment:sw

  85. SplicePredictor Online:plant pre mrna

  86. The tmRNA Website

  87. comRNA:secondary structure

  88. promec index:mrna ecoli






    
*PROTEIN*@2ls dna/rna

  89. PROTEIN : TITLE






    
*QUANTITATIVE TRAIT*@2ls dna/rna

  90. QTDT Home Page:quantitative and discrete (genetic) traits

  91. QTL Cartographer :genetic quantitative traits (sw)

  92. QTL Express: mapping quantitative trait loci






    
*RIBOSOMAL*@2ls dna/rna

  93. Database Of Ribosomal Crosslinks

  94. IRES Database:internal ribosome entry sites

  95. Ribosomal Database Project II 

  96. The European ribosomal RNA database

  97. Welcome to the 5S ribosomal RNA home page.:search






    
*RNA*@2ls dna/rna

  98. 5S rRNA data bank browser

  99. ALIDOT:sw detecting conserved rna structure

  100. ARB::rna sequence sw

  101. ASRP:aradopsis thaliana small rna project

  102. Biobases:rna at poznan

  103. Circles: Automated RNA analysis:sw

  104. Database of RNA Base-pair Structures

  105. ESSA RNA SOFTWARE HOME PAGE

  106. Eukaryotic Promoter Database:of rna

  107. GMAP:mrna sequence alignment sw

  108. GeneSeqer Online:pre-mrna

  109. Information about SELEX_DB:rna

  110. MIGAL: a tool for rna secondary structure comparison

  111. MicroRNA db

  112. MitoDat - Mendelian Inheritance and the Mitochondrion

  113. Modomics - Database of RNA Modifications

  114. Non-coding RNA Data Bank

  115. Pfold server:rna

  116. PseudoViewer2:rna

  117. RNA stuff @ tbi.univie.ac.at

  118. RNABase: The RNA Structure Database

  119. RNAJunction Database 

  120. RNAdb:mammalian noncoding rna

  121. RNAfold

  122. RNAsoft 

  123. Rfam Home Page   

  124. Ribosomal Internal Spacer Sequence Collection

  125. SRPDB :signal recognition particle database, rna

  126. Subviral RNA Database

  127. The RNA modification DataBase, University of Utah

  128. The miRNA Registry   

  129. Transterm - Database of transcript-related information:rna

  130. UMASS Amherst Yeast snoRNA Database

  131. piRNA Database

  132. snoRNA Database Homepage

  133. snoRNA Database

  134. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box RNAs






    
*SEQUENCE*@2ls dna/rna

  135. All-IN-ONE SEQ-ANALYZER

  136. Ann-spec 1.0 server:promoter sequence locator

  137. BLAT Search :sequence search in the genome

  138. BioEdit Sequence Alignment Editor for Windows 95/98/NT

  139. CDSParser 1.0:coding sequence parser

  140. CPHmodels - Homology modelling :search

  141. Comet:dna sequence

  142. DNA-CGR:sw for dna rna sequences

  143. Delila Programs:deoxy.. library language:sw

  144. EBI Reverse Translator:gene

  145. ELM- Functional Sites in Proteins:eukaryote linear motif

  146. EMBOSS-Install.html:sequence

  147. ESTate - EST analysis tools etc 

  148. Elementary Sequence Analysis, Brian Golding

  149. Ensembl Trace Server:dna sequence

  150. Entrez Home 

  151. FUGUE: sequence-structure homology recognition and alignment engine

  152. GP:manipulate dna/rna, protein sequences 

  153. GPCR Subfamily Classifier:sequence

  154. GenePalette: Software for analysis of sequence features in genomic DNA

  155. Greedy mixture learning for multiple motif discovery in biological sequences

  156. Groupe d'Étude et de contrôle des Variétés et des Semences:gene

  157. HYPHY Package Page   :maximum likely analysis of genetic sequence

  158. Hypertext DNA Sequence Display and Restriction Analysis:search

  159. Large Dot Plots:of dna sequences

  160. MaskerAid:aid to repeatmasker sw

  161. MuGeN:gene analysis

  162. Nucleic Acid Sequence Massager

  163. Oligo Calculator:oligonucleotide sequence

  164. OmniGene:sequence visualization

  165. Palindrome Checking Utility:for dna sequence

  166. Primer3 Software Distribution:sequence

  167. PySAT: Python Sequence Analysis Tools

  168. REPFIND:exact repeats in nucleotide sequences

  169. SAMBA:Systolic Accelerator for Molecular Biological Applications(sequences)

  170. SRSWWW at EMBL-EBI, Hinxton, Cambridge, UK :sequence retrieval system (of 80 + dbs)

  171. SeqPup Document:biosequence editor

  172. SeqVISTA:nucleotide in protein sequences

  173. Sequence Alerting System:dna

  174. Sequence Analysis for Mac OS X

  175. Simple Sequence Repeats Extraction Utility

  176. Staden Package Home Page:dna sequence

  177. The AAT Server:gene analysis and annotation tool

  178. The ASTRAL Compendium forSequence and Structure Analysis

  179. The Sequence Manipulation Suite:sw

  180. Transcriptional Element Search Engine

  181. Verbumculus Sequence Analyzer

  182. WEB-THERMODYN: sequence analysis software for profiling DNA helical stability

  183. WEIGHBOR Weighted Neighbor Joining:dna

  184. Welcome to CBS:center for biological sequence analysis dk

  185. mreps homepage:tandem repeats

  186. pDRAW32 - freeware DNA cloning, sequence analysis and plasmid/DNA plotting software 






    
*TRNA*@2ls  dna/rna

  187. AARS: Aminoacyl-tRNA Synthetase Data Bank

  188. Compilation of tRNA sequences and sequences of tRNA genes

  189. Genomic tRNA Database: Home:analysis of complete genomes

  190. Genomic tRNA Database
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