2LS : DNA/RNA

  1. GENE2LS : TITLE 

  2. BLAST

  3. COMPARATIVE SEQUENCE

  4. COMPUTATIONAL

  5. DNA

  6. GENE ALIGNMENT

  7. MICROARRAY

  8. MRNA

  9. PROTEIN

  10. RIBOSOMAL

  11. RNA

  12. SEQUENCE

  13. TRNA

    


    
*BLAST*@2ls dna/rna

  1. BLAST Search 

  2. BLAST2: Sequence Similarity Search Served by GenomeNet

  3. Bork Group's BLAST2 Search Service at EMBL

  4. ExPASy Interface to the EMBnet-CH BLAST Network Service

  5. Interactive Blast Query

  6. Saturated BLAST 

  7. The BLAST guide's glossary

  8. VecScreen - BLAST-based detection of vector contamination

  9. WU-BLAST Archives

  10. WWW BLAST at NCBI

  11. WebACT:blast comparison

  12. mpiBLAST: Open Source Parallel BLAST






    
*COMPARATIVE SEQUENCE*@2ls  dna/rna

  13. FamilyJewels: Comparative sequence analysis for genomic data.

  14. GeneAnnot Home Page:gene sequence comparison

  15. PolyPhred:fluorescent sequence comparison






    
*COMPUTATIONAL*@2ls dna/rna

  16. Bioinformatics and Computational Biology Software

  17. Gene Quantification

  18. Homepage for Anton Enright:computational genome analysis

  19. Markov Chain Monte Carlo Sequence Alignment Utility

  20. PEDANT front page:computational sequence analysis sw

  21. Publicly Available Software - Coordinated Lab for Computational Genomics 






    
*DNA*@2ls dna/rna

  22. 3DNA Home Page (Nucleic Acid Structures; Lu & Olson):sw

  23. AFFYR package: an R open and documented package to use oligonucleotide

  24. Activity Links:DNA

  25. Biozon :dna protein and paths

  26. CORG CNB Annotation:multispecies dna comparison and annotation

  27. Cister:cis-element cluster ,dna

  28. Codon Usage Database

  29. DNA Data Bank of Japan

  30. DNA Methylation Database

  31. DNA Mining Informatics Software

  32. DNA-Chip Analyzer (dChip):gene analysis sw

  33. DNAtools

  34. Dna Data Bank of Japan

  35. Dot Plot:rna-dna comparison

  36. ENCyclopedia Of DNA Elements (ENCODE)

  37. Euler: dNA fragment assembly software

  38. FLOWer: A Plant DNA Flow Cytometry Database

  39. GPCRDB home page:g protein coupled receptors

  40. Gain and Loss Analysis of DNA

  41. HapBlock - The dynamic programming algorithms for Haplotype Block Partitioning and Tag SNPs selection by Haplotype Data and Genotype Data 

  42. IDT Scitools:nucleic acid research

  43. Japanese SNP Database :single nucleotide

  44. Jmol DNA

  45. LOVD - An Open Source DNA variation database system

  46. Mitomap:poymorphisms of human dna

  47. NAR Database Issue:nucleic acid research

  48. NDB Biomolecular Resource:nuclear acid db

  49. NEBcutter V2.0:dna enzyme

  50. NUCLEIC ACID DATABASE

  51. NWFSC Molecular Biology Protocols:dna

  52. Oligonucleotide Properties Calculator

  53. PINdb - Database of Nuclear Protein Complexes

  54. Pattern Search and Discovery:dna

  55. RNA and DNA Folding - Applications - Center for Bioinformatics - Rensselaer Polytechnic Institute

  56. Restriction Enzyme Site Mapper version 3 

  57. S/MART DB - The S/MAR transaction Database:dna, chromatin

  58. STRBase:short tandem repeat dna

  59. Savannah: Project Info - DNArchitect

  60. The Aptamer Database :dna

  61. WatCut: Digest your DNA online, and create new restriction sites with silent mutations

  62. Web SIDD Home Page:stress induced dna destabilization

  63. YMF 3.0 - Software for Finding DNA Motifs

  64. dbSNP: A Database of Single Nucleotide Polymorphisms

  65. probeBase:rna,dna






    
*GENE ALIGNMENT*@2ls dna/rna

  66. COMBAT - Combined DNA/protein alignment

  67. Cross Species Aligner

  68. ESPript :sequence alignment

  69. GFF2APLOT MAIN PAGE: Pair-wise Alignments in PostScript.

  70. MAGNOLIA :multiple alignment

  71. STRAP:  refinement of huge multiple alignments 

  72. Visualization tools for bacterial genome alignments






    
*MICROARRAY*@2ls dna/rna

  73. BRB ArrayTools:micro

  74. BioArray - a tool to analyze macroarray images

  75. BioArray Software Environment

  76. Dapple: Image Analysis Software for DNA Microarrays

  77. ExpressYourself: microarray data processing platform

  78. MatArray toolbox:microarray

  79. MicroArray Explorer

  80. Stanford Microarray Database






    
*MRNA*@2ls  dna/rna

  81. HUMAN AU:mrna

  82. Plant miRNA Target Finder

  83. Spidey -- mRNA to genomic alignment:sw

  84. SplicePredictor Online:plant pre mrna

  85. The tmRNA Website

  86. comRNA:secondary structure

  87. promec index:mrna ecoli






    
*PROTEIN*@2ls dna/rna

  88. PROTEIN : TITLE






    
*RIBOSOMAL*@2ls dna/rna

  89. IRES Database:internal ribosome entry sites

  90. Ribosomal Database Project II 

  91. The European ribosomal RNA database

  92. Welcome to the 5S ribosomal RNA home page.:search






    
*RNA*@2ls dna/rna

  93. 5S rRNA data bank browser

  94. ALIDOT:sw detecting conserved rna structure

  95. ARB::rna sequence sw

  96. ASRP:aradopsis thaliana small rna project

  97. Biobases:rna at poznan

  98. Circles: Automated RNA analysis:sw

  99. Database of RNA Base-pair Structures

  100. ESSA RNA SOFTWARE HOME PAGE

  101. Eukaryotic Promoter Database:of rna

  102. GMAP:mrna sequence alignment sw

  103. GeneSeqer Online:pre-mrna

  104. Information about SELEX_DB:rna

  105. MIGAL: a tool for rna secondary structure comparison

  106. MitoDat - Mendelian Inheritance and the Mitochondrion

  107. Modomics - Database of RNA Modifications

  108. Non-coding RNA Data Bank

  109. Pfold server:rna

  110. PseudoViewer2:rna

  111. RNA stuff @ tbi.univie.ac.at

  112. RNABase: The RNA Structure Database

  113. RNAJunction Database 

  114. RNAdb:mammalian noncoding rna

  115. RNAfold

  116. RNAsoft 

  117. Rfam Home Page   

  118. Ribosomal Internal Spacer Sequence Collection

  119. Subviral RNA Database

  120. The RNA modification DataBase, University of Utah

  121. The miRNA Registry   

  122. Transterm - Database of transcript-related information:rna

  123. UMASS Amherst Yeast snoRNA Database

  124. piRNA Database

  125. snoRNA Database Homepage

  126. snoRNA Database

  127. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box RNAs






    
*SEQUENCE*@2ls dna/rna

  128. All-IN-ONE SEQ-ANALYZER

  129. Ann-spec 1.0 server:promoter sequence locator

  130. BLAT Search :sequence search in the genome

  131. BioEdit Sequence Alignment Editor for Windows 95/98/NT

  132. CDSParser 1.0:coding sequence parser

  133. CPHmodels - Homology modelling :search

  134. Comet:dna sequence

  135. DNA-CGR:sw for dna rna sequences

  136. Delila Programs:deoxy.. library language:sw

  137. ELM- Functional Sites in Proteins:eukaryote linear motif

  138. EMBOSS-Install.html:sequence

  139. ESTate - EST analysis tools etc 

  140. Elementary Sequence Analysis, Brian Golding

  141. Ensembl Trace Server:dna sequence

  142. Entrez Home 

  143. FUGUE: sequence-structure homology recognition and alignment engine

  144. GP:manipulate dna/rna, protein sequences 

  145. GPCR Subfamily Classifier:sequence

  146. GenePalette: Software for analysis of sequence features in genomic DNA

  147. Greedy mixture learning for multiple motif discovery in biological sequences

  148. Groupe d'Étude et de contrôle des Variétés et des Semences:gene

  149. HYPHY Package Page   :maximum likely analysis of genetic sequence

  150. Hypertext DNA Sequence Display and Restriction Analysis:search

  151. Large Dot Plots:of dna sequences

  152. MaskerAid:aid to repeatmasker sw

  153. MuGeN:gene analysis

  154. Nucleic Acid Sequence Massager

  155. Oligo Calculator:oligonucleotide sequence

  156. OmniGene:sequence visualization

  157. Palindrome Checking Utility:for dna sequence

  158. PipMaker and MultiPipMaker:compate dna sequences

  159. Primer3 Software Distribution:sequence

  160. PySAT: Python Sequence Analysis Tools

  161. QTDT Home Page:quantitative and discrete (genetic) traits

  162. QTL Cartographer :genetic quantitative traits (sw)

  163. REPFIND:exact repeats in nucleotide sequences

  164. SAMBA:Systolic Accelerator for Molecular Biological Applications(sequences)

  165. SRSWWW at EMBL-EBI, Hinxton, Cambridge, UK :sequence retrieval system (of 80 + dbs)

  166. SeqPup Document:biosequence editor

  167. SeqVISTA:nucleotide in protein sequences

  168. Sequence Alerting System:dna

  169. Sequence Analysis for Mac OS X

  170. Simple Sequence Repeats Extraction Utility

  171. Staden Package Home Page:dna sequence

  172. The AAT Server:gene analysis and annotation tool

  173. The ASTRAL Compendium forSequence and Structure Analysis

  174. The Sequence Manipulation Suite:sw

  175. Transcriptional Element Search Engine

  176. USD Parallel GeneSeqer Online Service:plant

  177. Verbumculus Sequence Analyzer

  178. WEB-THERMODYN: sequence analysis software for profiling DNA helical stability

  179. WEIGHBOR Weighted Neighbor Joining:dna

  180. Welcome to CBS:center for biological sequence analysis dk

  181. mreps homepage:tandem repeats

  182. pDRAW32 - freeware DNA cloning, sequence analysis and plasmid/DNA plotting software 






    
*TRNA*@2ls  dna/rna

  183. AARS: Aminoacyl-tRNA Synthetase Data Bank

  184. Genomic tRNA Database: Home:analysis of complete genomes

  185. Genomic tRNA Database
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